The 2.0 version of rSNPBase
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Variant report
Variant
rs28592246
Chromosome Location
chr21:16146982-16146983
allele
G/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:1)
LncRNA region (count:1)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:1 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr21:16144518..16147487-chr21:16436685..16438487,2
MCF-7
breast:
(count:1 , 50 per page) page:
1
No.
lncRNA name
Chromosome Location
lncRNA alias
1
lnc-AF127577.1-10
chr21:16146622-16147583
NONHSAT081178
No data
No data
Variant related genes
Relation type
ENSG00000180530
Chromatin interaction
Extended variants information (count: 9 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:9)
rs_ID
r
2
[population]
rs12329770
1.00[AMR][1000 genomes]
rs12329786
1.00[AMR][1000 genomes]
rs13433397
1.00[AMR][1000 genomes]
rs28434583
1.00[AMR][1000 genomes]
rs28469865
1.00[AMR][1000 genomes]
rs28684491
1.00[AMR][1000 genomes]
rs9977802
1.00[AMR][1000 genomes]
rs9977824
1.00[AMR][1000 genomes]
rs9981575
1.00[AMR][1000 genomes]
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links