Variant report
| Variant | rs9981575 |
|---|---|
| Chromosome Location | chr21:16195604-16195605 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:4)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
(count:4 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-NRIP1-1 | chr21:16195290-16196736 | ENSG00000235609.1 |
| 2 | lnc-NRIP1-1 | chr21:16195009-16196736 | NONHSAT081180 |
| 3 | lnc-NRIP1-1 | chr21:16195017-16195738 | NONHSAT081181 |
| 4 | lnc-NRIP1-1 | chr21:16191164-16196736 | ENSG00000235609.4 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs12329770 | 1.00[AMR][1000 genomes] |
| rs12329786 | 1.00[AMR][1000 genomes] |
| rs13433397 | 1.00[AMR][1000 genomes] |
| rs28434583 | 1.00[AMR][1000 genomes] |
| rs28469865 | 1.00[AMR][1000 genomes] |
| rs28592246 | 1.00[AMR][1000 genomes] |
| rs28665955 | 1.00[AFR][1000 genomes] |
| rs28684491 | 1.00[AMR][1000 genomes] |
| rs9974267 | 1.00[CHD][hapmap] |
| rs9977802 | 1.00[AMR][1000 genomes] |
| rs9977824 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869911 | chr21:16184645-16210579 | Enhancers Weak transcription Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs9981575 | SAMSN1 | cis | lymphoblastoid | seeQTL |
Chromatin state (count:0 , 50 per page) page:
| No data |
