Variant report

Variant	rs28684491
Chromosome Location	chr21:16186307-16186308
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12329770	1.00[AMR][1000 genomes]
rs12329786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13433397	1.00[AMR][1000 genomes]
rs13433511	0.84[AFR][1000 genomes]
rs28434583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28469865	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28592246	1.00[AMR][1000 genomes]
rs9977802	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9977824	1.00[AMR][1000 genomes]
rs9981575	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869911	chr21:16184645-16210579	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16186200-16186400	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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