Variant report

Variant	rs2849393
Chromosome Location	chr18:12050727-12050728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PAX5	chr18:12050337-12050879	GM12878	blood:	n/a	chr18:12050475-12050484
2	SPI1	chr18:12049975-12050967	GM12891	blood:	n/a	chr18:12050034-12050043 chr18:12050509-12050516 chr18:12050475-12050484
3	IKZF1	chr18:12049927-12050870	GM12878	blood:	n/a	n/a
4	YY1	chr18:12050391-12050778	GM12891	blood:	n/a	chr18:12050531-12050541 chr18:12050530-12050538
5	MTA3	chr18:12050242-12050894	GM12878	blood:	n/a	n/a
6	SPI1	chr18:12050050-12050924	GM12891	blood:	n/a	chr18:12050509-12050516 chr18:12050475-12050484
7	CHD2	chr18:12050177-12050767	GM12878	blood:	n/a	n/a
8	IRF4	chr18:12050131-12050759	GM12878	blood:	n/a	n/a
9	YY1	chr18:12050286-12050833	GM12878	blood:	n/a	chr18:12050531-12050541 chr18:12050530-12050538
10	NFIC	chr18:12049896-12050982	GM12878	blood:	n/a	n/a
11	SPI1	chr18:12050066-12050992	HL-60	blood:	n/a	chr18:12050509-12050516 chr18:12050475-12050484
12	RUNX3	chr18:12049968-12051005	GM12878	blood:	n/a	n/a
13	TBL1XR1	chr18:12049941-12050772	GM12878	blood:	n/a	n/a
14	WRNIP1	chr18:12050293-12050729	GM12878	blood:	n/a	n/a
15	YY1	chr18:12050321-12050730	GM12892	blood:	n/a	chr18:12050531-12050541 chr18:12050530-12050538
16	BHLHE40	chr18:12050097-12050797	GM12878	blood:	n/a	n/a
17	PAX5	chr18:12050440-12050822	GM12891	blood:	n/a	chr18:12050475-12050484
18	EBF1	chr18:12050188-12050796	GM12878	blood:	n/a	n/a
19	PAX5	chr18:12050189-12050989	GM12878	blood:	n/a	chr18:12050475-12050484
20	PAX5	chr18:12050601-12050823	GM12892	blood:	n/a	n/a
21	EP300	chr18:12050037-12050932	GM12878	blood:	n/a	chr18:12050475-12050489
22	TCF12	chr18:12050419-12050945	ECC-1	luminal epithelium:	n/a	chr18:12050695-12050702
23	CUX1	chr18:12050245-12050737	GM12878	blood:	n/a	n/a
24	RUNX3	chr18:12049863-12050981	GM12878	blood:	n/a	n/a
25	NFIC	chr18:12049995-12050914	GM12878	blood:	n/a	n/a
26	EBF1	chr18:12050291-12050860	GM12878	blood:	n/a	n/a
27	PAX5	chr18:12050306-12050882	GM12878	blood:	n/a	chr18:12050475-12050484
28	PAX5	chr18:12050540-12050806	GM12892	blood:	n/a	n/a
29	MTA3	chr18:12049903-12050961	GM12878	blood:	n/a	n/a
30	SPI1	chr18:12050012-12050922	GM12878	blood:	n/a	chr18:12050034-12050043 chr18:12050509-12050516 chr18:12050475-12050484
31	FOXM1	chr18:12050220-12050733	GM12878	blood:	n/a	n/a
32	YY1	chr18:12050285-12050840	GM12892	blood:	n/a	chr18:12050531-12050541 chr18:12050530-12050538
33	PAX5	chr18:12050317-12050926	GM12878	blood:	n/a	chr18:12050475-12050484
34	NFIC	chr18:12050372-12051012	ECC-1	luminal epithelium:	n/a	n/a
35	RELA	chr18:12050209-12050761	GM19099	blood:	n/a	n/a
36	EP300	chr18:12050119-12050815	GM12878	blood:	n/a	chr18:12050475-12050489
37	YY1	chr18:12050266-12050787	GM12878	blood:	n/a	chr18:12050531-12050541 chr18:12050530-12050538
38	IRF4	chr18:12050083-12050758	GM12878	blood:	n/a	n/a
39	NFIC	chr18:12050350-12050971	ECC-1	luminal epithelium:	n/a	n/a

Variant related genes	Relation type
ENSG00000267292	TF binding region

Extended variants
information (count: 140 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs10445426	0.89[CHB][hapmap]
rs11663077	0.89[CHB][hapmap]
rs11872277	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11872729	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11875081	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11875970	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11876652	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11876694	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11876698	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12604417	0.89[CHB][hapmap]
rs12953431	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12953485	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12953958	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12954230	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12963290	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12965571	0.89[CHB][hapmap]
rs12965804	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12965831	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12965945	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12966234	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12966286	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12970450	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12970461	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1662612	0.85[JPT][hapmap]
rs1942851	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1942852	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1986750	0.89[CHB][hapmap];0.80[JPT][hapmap]
rs1986751	0.83[CHB][hapmap]
rs2006690	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2075826	0.81[JPT][hapmap]
rs2849401	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2849402	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2849404	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2849405	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2849414	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2849415	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2849416	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2849418	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2849420	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851900	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2851901	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851902	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851903	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2851906	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2851915	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs2851916	0.86[ASN][1000 genomes]
rs2851919	0.88[EUR][1000 genomes]
rs2851922	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28535741	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28567958	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4239305	0.84[CHB][hapmap]
rs4239307	0.89[CHB][hapmap]
rs4261610	0.90[CHB][hapmap]
rs4271655	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4321255	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4347689	0.90[CHB][hapmap]
rs4359510	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4399596	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4399597	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4419117	0.90[CHB][hapmap]
rs4516292	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4519391	0.89[CHB][hapmap]
rs4528648	0.90[CHB][hapmap]
rs4538071	0.90[CHB][hapmap]
rs4617931	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4643402	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4796944	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4796947	0.88[CHB][hapmap]
rs4797612	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4797613	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4797615	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4797616	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4797617	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4797618	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56076781	0.81[ASN][1000 genomes]
rs57512036	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs594235	0.85[JPT][hapmap]
rs596081	0.85[JPT][hapmap]
rs597094	0.85[JPT][hapmap]
rs609588	0.80[JPT][hapmap]
rs613993	0.81[JPT][hapmap]
rs640088	0.85[JPT][hapmap]
rs6505710	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6505712	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6505717	0.89[CHB][hapmap]
rs655840	0.80[JPT][hapmap]
rs656193	0.85[JPT][hapmap]
rs7227955	0.89[CHB][hapmap]
rs7230733	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7231001	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7231981	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7236715	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7237502	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7237877	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7240093	0.89[CHB][hapmap]
rs7242225	0.90[CHB][hapmap]
rs7242326	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7242561	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7242892	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7243248	0.84[CHB][hapmap]
rs7244723	0.89[CHB][hapmap]
rs727746	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7506731	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8083240	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8083329	0.95[CHB][hapmap]
rs8083535	0.95[CHB][hapmap]
rs8095234	0.90[CHB][hapmap]
rs8095647	0.90[CHB][hapmap]
rs8099334	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9303759	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs948752	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs949229	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs949230	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs949231	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs949232	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs949233	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9948384	0.89[CHB][hapmap]
rs9951929	0.89[CHB][hapmap]
rs9952038	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9956997	0.89[CHB][hapmap]
rs9959517	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9959561	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9959774	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9959781	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9960429	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9960443	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055453	chr18:11776790-12110135	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv543654	chr18:11776790-12110135	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	esv2758470	chr18:11897023-12076102	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	esv2758713	chr18:11897023-12076102	Flanking Active TSS Active TSS Enhancers Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
5	nsv909384	chr18:11907374-12101109	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
6	nsv909386	chr18:11938102-12095950	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
7	nsv909388	chr18:11987988-12141372	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv909389	chr18:11987988-12141625	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
9	nsv909390	chr18:11987988-12155371	Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
10	nsv909391	chr18:11989416-12146408	Active TSS Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
11	nsv909392	chr18:11989416-12146698	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
12	nsv909393	chr18:12001258-12155371	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
13	nsv909394	chr18:12017343-12141372	Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
14	nsv1063125	chr18:12046892-12918251	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	130 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2849393	RP11-64C12.3	cis	lung	GTEx
rs2849393	RP11-64C12.3	cis	Esophagus Mucosa	GTEx

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:12048200-12051000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr18:12048200-12051000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr18:12048600-12050800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr18:12048600-12050800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr18:12048800-12051200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr18:12049000-12052400	Weak transcription	HSMM	muscle
7	chr18:12049000-12060000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr18:12049200-12052200	Weak transcription	HSMMtube	muscle
9	chr18:12049800-12050800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr18:12049800-12050800	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr18:12050200-12050800	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr18:12050200-12052800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr18:12050400-12050800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr18:12050600-12050800	Flanking Active TSS	Primary B cells from peripheral blood	blood
15	chr18:12050600-12050800	Enhancers	Colonic Mucosa	Colon
16	chr18:12050600-12050800	Flanking Active TSS	GM12878-XiMat	blood
17	chr18:12050600-12051200	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr18:12050600-12051400	Enhancers	Primary B cells from cord blood	blood

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