Variant report
Variant | rs9960443 |
---|---|
Chromosome Location | chr18:12057854-12057855 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:70)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | CTCF | chr18:12057760-12057910 | HepG2 | liver: | n/a | n/a |
2 | ZNF143 | chr18:12057710-12057973 | H1-hESC | embryonic stem cell: | n/a | n/a |
3 | CTCF | chr18:12057578-12057967 | K562 | blood: | n/a | n/a |
4 | CTCF | chr18:12057780-12057930 | HEK293 | kidney: | n/a | n/a |
5 | CTCF | chr18:12057740-12057890 | GM12865 | blood: | n/a | n/a |
6 | CTCF | chr18:12057820-12057860 | MCF-7 | breast: | n/a | n/a |
7 | CTCF | chr18:12057760-12057910 | GM12864 | blood: | n/a | n/a |
8 | RAD21 | chr18:12057765-12057927 | K562 | blood: | n/a | n/a |
9 | CTCF | chr18:12057753-12057913 | K562 | blood: | n/a | n/a |
10 | CTCF | chr18:12057720-12057870 | GM12874 | blood: | n/a | n/a |
11 | CTCF | chr18:12057740-12057890 | HCPEpiC | choroid plexus: | n/a | n/a |
12 | CTCF | chr18:12057760-12057910 | A549 | lung: | n/a | n/a |
13 | CTCF | chr18:12057783-12057898 | HUVEC | blood vessel: | n/a | n/a |
14 | CTCF | chr18:12057760-12057910 | HCT-116 | colon: | n/a | n/a |
15 | CTCF | chr18:12057800-12057950 | GM12873 | blood: | n/a | n/a |
16 | CTCF | chr18:12057746-12057914 | Gliobla | brain: | n/a | n/a |
17 | CTCF | chr18:12057821-12057863 | GM19239 | blood: | n/a | n/a |
18 | CTCF | chr18:12057772-12057890 | HepG2 | liver: | n/a | n/a |
19 | CTCF | chr18:12057780-12057930 | GM12871 | blood: | n/a | n/a |
20 | CTCF | chr18:12057742-12057941 | HepG2 | liver: | n/a | n/a |
21 | CTCF | chr18:12057720-12057870 | HRE | kidney: | n/a | n/a |
22 | RAD21 | chr18:12057616-12057992 | H1-hESC | embryonic stem cell: | n/a | n/a |
23 | CTCF | chr18:12057760-12057923 | Hela-S3 | cervix: | n/a | n/a |
24 | CTCF | chr18:12057740-12057890 | HEK293 | kidney: | n/a | n/a |
25 | CTCF | chr18:12057740-12057890 | GM12868 | blood: | n/a | n/a |
26 | CTCF | chr18:12057700-12057932 | K562 | blood: | n/a | n/a |
27 | CTCF | chr18:12057780-12057930 | HMF | breast: | n/a | n/a |
28 | CTCF | chr18:12057796-12057930 | Fibrobl | skin: | n/a | n/a |
29 | RAD21 | chr18:12057615-12057956 | H1-hESC | embryonic stem cell: | n/a | n/a |
30 | CTCF | chr18:12057720-12057870 | GM12869 | blood: | n/a | n/a |
31 | YY1 | chr18:12057669-12057987 | H1-hESC | embryonic stem cell: | n/a | n/a |
32 | CTCF | chr18:12057740-12057890 | GM12873 | blood: | n/a | n/a |
33 | RAD21 | chr18:12057700-12058002 | H1-hESC | embryonic stem cell: | n/a | n/a |
34 | CTCF | chr18:12057783-12057875 | GM13977 | blood: | n/a | n/a |
35 | CTCF | chr18:12057714-12057946 | H1-hESC | embryonic stem cell: | n/a | n/a |
36 | CTCF | chr18:12057800-12057950 | K562 | blood: | n/a | n/a |
37 | CTCF | chr18:12057720-12057870 | HFF | foreskin: | n/a | n/a |
38 | CTCF | chr18:12057720-12057870 | GM12872 | blood: | n/a | n/a |
39 | CTCF | chr18:12057760-12057910 | GM06990 | blood: | n/a | n/a |
40 | CTCF | chr18:12057760-12057920 | GM12878 | blood: | n/a | n/a |
41 | CTCF | chr18:12057760-12057910 | GM12866 | blood: | n/a | n/a |
42 | CTCF | chr18:12057720-12057870 | Hela-S3 | cervix: | n/a | n/a |
43 | RAD21 | chr18:12057720-12057910 | HepG2 | liver: | n/a | n/a |
44 | CTCF | chr18:12057720-12057870 | SK-N-SH_RA | brain: | n/a | n/a |
45 | CTCF | chr18:12057764-12057906 | GM12892 | blood: | n/a | n/a |
46 | CTCF | chr18:12057740-12057890 | HVMF | connective: | n/a | n/a |
47 | CTCF | chr18:12057760-12057910 | GM12867 | blood: | n/a | n/a |
48 | CTCF | chr18:12057740-12057890 | GM12870 | blood: | n/a | n/a |
49 | CTCF | chr18:12057777-12057912 | MCF-7 | breast: | n/a | n/a |
50 | CTCF | chr18:12057813-12057899 | GM13976 | blood: | n/a | n/a |
No data |
No data |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000212712 | TF binding region |
rs_ID | r2[population] |
---|---|
rs11872277 | 0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11872729 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs11875081 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11875970 | 0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11876652 | 0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11876694 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11876698 | 0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12953431 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12953485 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12953958 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12954230 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12958791 | 0.81[EUR][1000 genomes] |
rs12963290 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12965804 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12965831 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12965945 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12966234 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs12966286 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12970450 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12970461 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13381564 | 0.83[EUR][1000 genomes] |
rs1815925 | 0.82[EUR][1000 genomes] |
rs1942851 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1942852 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2006690 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2849393 | 0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2849401 | 0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs2849402 | 0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2849404 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2849405 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2849414 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2849415 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2849416 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2849418 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2849420 | 0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2851900 | 0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2851901 | 0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2851902 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2851903 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2851906 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2851915 | 0.81[ASN][1000 genomes] |
rs2851916 | 0.84[ASN][1000 genomes] |
rs2851919 | 0.82[EUR][1000 genomes] |
rs2851922 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs28535741 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs28567958 | 0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4271655 | 0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs4321255 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4359510 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4399596 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4399597 | 0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4516292 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4617931 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4643402 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4796944 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4797612 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4797613 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs4797615 | 0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4797616 | 0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4797617 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4797618 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs57512036 | 0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6505710 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6505712 | 0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs7230733 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7231001 | 0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7231981 | 0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7236715 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7237502 | 0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7237877 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7242225 | 0.83[EUR][1000 genomes] |
rs7242326 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs7242561 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7242892 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs727746 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7506731 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs8083240 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs8099334 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs948752 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs949229 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs949230 | 0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs949231 | 0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs949232 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs949233 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs9952038 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9959517 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9959561 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9959774 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9959781 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9960429 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1055453 | chr18:11776790-12110135 | Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 66 gene(s) | inside rSNPs | diseases |
2 | nsv543654 | chr18:11776790-12110135 | Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 66 gene(s) | inside rSNPs | diseases |
3 | esv2758470 | chr18:11897023-12076102 | Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 35 gene(s) | inside rSNPs | diseases |
4 | esv2758713 | chr18:11897023-12076102 | Flanking Active TSS Active TSS Enhancers Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 35 gene(s) | inside rSNPs | diseases |
5 | nsv909384 | chr18:11907374-12101109 | Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 42 gene(s) | inside rSNPs | diseases |
6 | nsv909386 | chr18:11938102-12095950 | Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 34 gene(s) | inside rSNPs | diseases |
7 | nsv909388 | chr18:11987988-12141372 | Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
8 | nsv909389 | chr18:11987988-12141625 | Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
9 | nsv909390 | chr18:11987988-12155371 | Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
10 | nsv909391 | chr18:11989416-12146408 | Active TSS Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
11 | nsv909392 | chr18:11989416-12146698 | Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
12 | nsv909393 | chr18:12001258-12155371 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
13 | nsv909394 | chr18:12017343-12141372 | Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
14 | nsv1063125 | chr18:12046892-12918251 | Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 130 gene(s) | inside rSNPs | diseases |
15 | nsv909395 | chr18:12057195-12078224 | Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr18:12049000-12060000 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
2 | chr18:12054200-12063400 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
3 | chr18:12055600-12076400 | Weak transcription | Right Atrium | heart |
4 | chr18:12056400-12061600 | Weak transcription | Spleen | Spleen |
5 | chr18:12057400-12058000 | Strong transcription | iPS DF 19.11 Cell Line | embryonic stem cell |