Variant report

Variant	rs28542032
Chromosome Location	chr4:143723801-143723802
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12331053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17016765	1.00[EUR][1000 genomes]
rs17016793	0.94[EUR][1000 genomes]
rs28647363	1.00[EUR][1000 genomes]
rs28753896	1.00[EUR][1000 genomes]
rs55780736	1.00[EUR][1000 genomes]
rs55785946	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55909030	1.00[AMR][1000 genomes]
rs56027664	1.00[EUR][1000 genomes]
rs56095249	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56158313	1.00[EUR][1000 genomes]
rs56254574	1.00[EUR][1000 genomes]
rs56258617	1.00[EUR][1000 genomes]
rs56267841	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56293642	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56377132	1.00[EUR][1000 genomes]
rs6812076	1.00[EUR][1000 genomes]
rs6814777	1.00[EUR][1000 genomes]
rs6832375	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv595606	chr4:143631691-143729595	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143698800-143738600	Weak transcription	Aorta	Aorta
2	chr4:143709200-143732200	Weak transcription	Left Ventricle	heart
3	chr4:143718600-143736600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr4:143720200-143733200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr4:143722000-143724000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:143722200-143724000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:143722600-143724000	Enhancers	HMEC	breast
8	chr4:143723000-143724000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links