Variant report

Variant	rs55785946
Chromosome Location	chr4:143562996-143562997
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12331053	1.00[AMR][1000 genomes]
rs17016765	0.84[EUR][1000 genomes]
rs28542032	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28647363	0.84[EUR][1000 genomes]
rs28753896	0.84[EUR][1000 genomes]
rs55780736	0.84[EUR][1000 genomes]
rs56027664	0.84[EUR][1000 genomes]
rs56095249	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56158313	0.84[EUR][1000 genomes]
rs56254574	0.84[EUR][1000 genomes]
rs56258617	0.84[EUR][1000 genomes]
rs56267841	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56293642	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56377132	0.84[EUR][1000 genomes]
rs6812076	0.84[EUR][1000 genomes]
rs6814777	0.84[EUR][1000 genomes]
rs6832375	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143537000-143575800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143559200-143568600	Weak transcription	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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