Variant report

Variant	rs56158313
Chromosome Location	chr4:143664017-143664018
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12331053	0.94[EUR][1000 genomes]
rs17016765	1.00[EUR][1000 genomes]
rs17016793	0.94[EUR][1000 genomes]
rs28542032	1.00[EUR][1000 genomes]
rs28647363	1.00[EUR][1000 genomes]
rs28753896	1.00[EUR][1000 genomes]
rs55780736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55785946	0.84[EUR][1000 genomes]
rs56027664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56095249	1.00[EUR][1000 genomes]
rs56254574	1.00[EUR][1000 genomes]
rs56258617	1.00[EUR][1000 genomes]
rs56267841	0.84[EUR][1000 genomes]
rs56293642	1.00[EUR][1000 genomes]
rs56377132	1.00[EUR][1000 genomes]
rs6812076	1.00[EUR][1000 genomes]
rs6814777	1.00[EUR][1000 genomes]
rs6832375	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv595606	chr4:143631691-143729595	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143642800-143664200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143651000-143664400	Weak transcription	Aorta	Aorta
3	chr4:143653200-143664400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr4:143663000-143664200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:143663800-143665200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:143664000-143665000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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