Variant report
| Variant | rs28562858 |
|---|---|
| Chromosome Location | chr18:24893267-24893268 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs16943478 | 1.00[EUR][1000 genomes] |
| rs28587549 | 1.00[EUR][1000 genomes] |
| rs56847646 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58062044 | 1.00[EUR][1000 genomes] |
| rs59327637 | 1.00[EUR][1000 genomes] |
| rs59834932 | 1.00[EUR][1000 genomes] |
| rs61073967 | 1.00[EUR][1000 genomes] |
| rs61462037 | 1.00[EUR][1000 genomes] |
| rs73406613 | 1.00[EUR][1000 genomes] |
| rs73406629 | 1.00[EUR][1000 genomes] |
| rs73406638 | 1.00[EUR][1000 genomes] |
| rs73406648 | 1.00[EUR][1000 genomes] |
| rs73406651 | 1.00[EUR][1000 genomes] |
| rs73406653 | 1.00[EUR][1000 genomes] |
| rs73406655 | 1.00[EUR][1000 genomes] |
| rs73406660 | 1.00[EUR][1000 genomes] |
| rs73406669 | 1.00[EUR][1000 genomes] |
| rs73406674 | 1.00[EUR][1000 genomes] |
| rs73410731 | 1.00[EUR][1000 genomes] |
| rs73944555 | 1.00[EUR][1000 genomes] |
| rs73944557 | 1.00[EUR][1000 genomes] |
| rs73944559 | 1.00[EUR][1000 genomes] |
| rs73944561 | 1.00[EUR][1000 genomes] |
| rs73944562 | 1.00[EUR][1000 genomes] |
| rs8090807 | 1.00[EUR][1000 genomes] |
| rs9947234 | 1.00[EUR][1000 genomes] |
| rs9953576 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9958490 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9961838 | 1.00[EUR][1000 genomes] |
| rs9962750 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3331699 | chr18:24864438-25095929 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | esv2761996 | chr18:24866083-25818618 | Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:24892200-24894200 | Enhancers | Skeletal Muscle Female | skeletal muscle |
| 2 | chr18:24892400-24893400 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
