Variant report

Variant	rs59327637
Chromosome Location	chr18:24769273-24769274
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TAF4B-4	chr18:24768707-24770662	ENSG00000260372.2

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1485809	1.00[EUR][1000 genomes]
rs16943478	1.00[EUR][1000 genomes]
rs28562858	1.00[EUR][1000 genomes]
rs28587549	1.00[EUR][1000 genomes]
rs56847646	1.00[EUR][1000 genomes]
rs58062044	1.00[EUR][1000 genomes]
rs59834932	1.00[EUR][1000 genomes]
rs61073967	1.00[EUR][1000 genomes]
rs61462037	1.00[EUR][1000 genomes]
rs73406613	1.00[EUR][1000 genomes]
rs73406629	1.00[EUR][1000 genomes]
rs73406638	1.00[EUR][1000 genomes]
rs73406648	1.00[EUR][1000 genomes]
rs73406651	1.00[EUR][1000 genomes]
rs73406653	1.00[EUR][1000 genomes]
rs73406655	1.00[EUR][1000 genomes]
rs73406660	1.00[EUR][1000 genomes]
rs73406669	1.00[EUR][1000 genomes]
rs73406674	1.00[EUR][1000 genomes]
rs73410731	1.00[EUR][1000 genomes]
rs73944555	1.00[EUR][1000 genomes]
rs73944557	1.00[EUR][1000 genomes]
rs73944559	1.00[EUR][1000 genomes]
rs73944561	1.00[EUR][1000 genomes]
rs73944562	1.00[EUR][1000 genomes]
rs8090807	1.00[EUR][1000 genomes]
rs9947234	1.00[EUR][1000 genomes]
rs9953576	1.00[EUR][1000 genomes]
rs9958490	1.00[EUR][1000 genomes]
rs9961838	1.00[EUR][1000 genomes]
rs9962750	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909473	chr18:24655235-24792075	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv909474	chr18:24683823-24832023	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv909475	chr18:24687324-24776226	Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv530515	chr18:24704459-24883897	Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv909476	chr18:24722839-24779601	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv1810563	chr18:24727747-24773141	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24765800-24769800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr18:24768800-24771200	Enhancers	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links