Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs16943478	1.00[EUR][1000 genomes]
rs28562858	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28587549	1.00[EUR][1000 genomes]
rs58062044	1.00[EUR][1000 genomes]
rs59327637	1.00[EUR][1000 genomes]
rs59834932	1.00[EUR][1000 genomes]
rs61073967	1.00[EUR][1000 genomes]
rs61462037	1.00[EUR][1000 genomes]
rs73406613	1.00[EUR][1000 genomes]
rs73406629	1.00[EUR][1000 genomes]
rs73406638	1.00[EUR][1000 genomes]
rs73406648	1.00[EUR][1000 genomes]
rs73406651	1.00[EUR][1000 genomes]
rs73406653	1.00[EUR][1000 genomes]
rs73406655	1.00[EUR][1000 genomes]
rs73406660	1.00[EUR][1000 genomes]
rs73406669	1.00[EUR][1000 genomes]
rs73406674	1.00[EUR][1000 genomes]
rs73410731	1.00[EUR][1000 genomes]
rs73944555	1.00[EUR][1000 genomes]
rs73944557	1.00[EUR][1000 genomes]
rs73944559	1.00[EUR][1000 genomes]
rs73944561	1.00[EUR][1000 genomes]
rs73944562	1.00[EUR][1000 genomes]
rs8090807	1.00[EUR][1000 genomes]
rs9947234	1.00[EUR][1000 genomes]
rs9953576	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9958490	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9961838	1.00[EUR][1000 genomes]
rs9962750	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530515	chr18:24704459-24883897	Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3331699	chr18:24864438-25095929	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24881400-24882400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr18:24881600-24882200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr18:24881600-24882400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr18:24881600-24882400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr18:24881600-24882400	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr18:24881800-24882200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr18:24881800-24882400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr18:24882000-24882200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr18:24882000-24882400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr18:24882000-24882400	Enhancers	Brain Cingulate Gyrus	brain
11	chr18:24882000-24882400	Enhancers	Brain Substantia Nigra	brain

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