Variant report

Variant	rs61462037
Chromosome Location	chr18:24716922-24716923
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1485809	1.00[EUR][1000 genomes]
rs16943478	1.00[EUR][1000 genomes]
rs28562858	1.00[EUR][1000 genomes]
rs28587549	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56847646	1.00[EUR][1000 genomes]
rs58062044	1.00[EUR][1000 genomes]
rs59327637	1.00[EUR][1000 genomes]
rs59834932	1.00[EUR][1000 genomes]
rs61073967	1.00[EUR][1000 genomes]
rs73406613	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406629	1.00[EUR][1000 genomes]
rs73406638	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406648	1.00[EUR][1000 genomes]
rs73406651	1.00[EUR][1000 genomes]
rs73406653	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406660	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406674	1.00[EUR][1000 genomes]
rs73410731	1.00[EUR][1000 genomes]
rs73944555	1.00[EUR][1000 genomes]
rs73944557	1.00[EUR][1000 genomes]
rs73944559	1.00[EUR][1000 genomes]
rs73944561	1.00[EUR][1000 genomes]
rs73944562	1.00[EUR][1000 genomes]
rs8090807	1.00[EUR][1000 genomes]
rs9947234	1.00[EUR][1000 genomes]
rs9953576	1.00[EUR][1000 genomes]
rs9958490	1.00[EUR][1000 genomes]
rs9961838	1.00[EUR][1000 genomes]
rs9962750	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067103	chr18:24524011-24760469	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv543668	chr18:24524011-24760469	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv909473	chr18:24655235-24792075	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv909474	chr18:24683823-24832023	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv909475	chr18:24687324-24776226	Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv530515	chr18:24704459-24883897	Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24710200-24717800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr18:24711800-24718200	Weak transcription	Spleen	Spleen
3	chr18:24715600-24717600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr18:24715600-24718400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr18:24716400-24717400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr18:24716400-24717400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr18:24716400-24717400	Weak transcription	Pancreas	Pancrea
8	chr18:24716400-24717800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr18:24716400-24717800	Weak transcription	Left Ventricle	heart
10	chr18:24716400-24718000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr18:24716400-24718400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr18:24716400-24718600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr18:24716400-24727400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr18:24716600-24717200	Enhancers	HepG2	liver
15	chr18:24716600-24717600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr18:24716600-24718000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr18:24716600-24718000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr18:24716600-24718200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr18:24716600-24721000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr18:24716600-24722600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr18:24716600-24722600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr18:24716600-24723600	Weak transcription	Gastric	stomach
23	chr18:24716600-24724000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr18:24716600-24730200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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