Variant report

Variant	rs28580091
Chromosome Location	chr6:131017364-131017365
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10456989	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10456991	1.00[ASN][1000 genomes]
rs10457558	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190916	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12192664	1.00[ASN][1000 genomes]
rs12197236	1.00[ASN][1000 genomes]
rs12200243	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200889	1.00[ASN][1000 genomes]
rs12207323	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207401	1.00[ASN][1000 genomes]
rs12207735	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210483	1.00[ASN][1000 genomes]
rs1396249	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1603657	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059473	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2221651	0.95[EUR][1000 genomes]
rs34043716	1.00[ASN][1000 genomes]
rs34157430	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34261251	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4549635	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569700	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6906238	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912992	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6937306	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6940545	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71572935	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483175	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830806	chr6:130938330-131107137	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv604664	chr6:131004998-131115817	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131005600-131017800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:131014800-131018400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:131015400-131017600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:131015400-131018400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr6:131015600-131017600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr6:131015800-131018000	Weak transcription	Dnd41	blood
7	chr6:131015800-131019000	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr6:131016200-131017600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:131016200-131017600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:131016200-131017600	Weak transcription	Osteobl	bone
11	chr6:131016200-131017800	Weak transcription	Primary T cells from cord blood	blood
12	chr6:131016200-131018200	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr6:131016400-131017600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr6:131016800-131017800	Weak transcription	NHDF-Ad	bronchial
15	chr6:131017000-131017800	Enhancers	H9 Cell Line	embryonic stem cell

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