Variant report

Variant	rs34043716
Chromosome Location	chr6:131104473-131104474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10456989	1.00[ASN][1000 genomes]
rs10456991	1.00[ASN][1000 genomes]
rs10457558	1.00[ASN][1000 genomes]
rs12190916	1.00[ASN][1000 genomes]
rs12192664	1.00[ASN][1000 genomes]
rs12193575	1.00[ASN][1000 genomes]
rs12193685	1.00[ASN][1000 genomes]
rs12197236	1.00[ASN][1000 genomes]
rs12200243	1.00[ASN][1000 genomes]
rs12200889	1.00[ASN][1000 genomes]
rs12202345	1.00[ASN][1000 genomes]
rs12207323	1.00[ASN][1000 genomes]
rs12207401	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207735	1.00[ASN][1000 genomes]
rs12210131	1.00[ASN][1000 genomes]
rs12210483	1.00[ASN][1000 genomes]
rs12212907	1.00[ASN][1000 genomes]
rs12214117	1.00[ASN][1000 genomes]
rs13199082	1.00[ASN][1000 genomes]
rs13205393	1.00[ASN][1000 genomes]
rs13219477	1.00[ASN][1000 genomes]
rs1396249	1.00[ASN][1000 genomes]
rs1603657	1.00[ASN][1000 genomes]
rs17059473	1.00[ASN][1000 genomes]
rs28580091	1.00[ASN][1000 genomes]
rs34157430	1.00[ASN][1000 genomes]
rs34206551	1.00[ASN][1000 genomes]
rs34261251	1.00[ASN][1000 genomes]
rs34948572	1.00[ASN][1000 genomes]
rs35061946	1.00[ASN][1000 genomes]
rs4549635	1.00[ASN][1000 genomes]
rs6906238	1.00[ASN][1000 genomes]
rs6912992	1.00[ASN][1000 genomes]
rs6937306	1.00[ASN][1000 genomes]
rs6940545	1.00[ASN][1000 genomes]
rs71572935	1.00[ASN][1000 genomes]
rs71572945	1.00[ASN][1000 genomes]
rs71572950	1.00[ASN][1000 genomes]
rs7760822	1.00[ASN][1000 genomes]
rs9483175	1.00[ASN][1000 genomes]
rs9885632	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830806	chr6:130938330-131107137	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv604664	chr6:131004998-131115817	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1025019	chr6:131074711-131116070	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv604665	chr6:131077027-131115817	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv604666	chr6:131078180-131122295	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131101400-131105600	Weak transcription	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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