Variant report

Variant	rs34157430
Chromosome Location	chr6:131029549-131029550
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10456989	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10456991	1.00[ASN][1000 genomes]
rs10457558	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190916	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12192664	1.00[ASN][1000 genomes]
rs12197236	1.00[ASN][1000 genomes]
rs12200243	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200889	1.00[ASN][1000 genomes]
rs12207323	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207401	1.00[ASN][1000 genomes]
rs12207735	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210483	1.00[ASN][1000 genomes]
rs12212907	1.00[ASN][1000 genomes]
rs12214117	1.00[ASN][1000 genomes]
rs1396249	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1603657	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059473	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2221651	0.96[EUR][1000 genomes]
rs28580091	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34043716	1.00[ASN][1000 genomes]
rs34261251	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4549635	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6906238	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912992	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6937306	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6940545	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71572935	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483175	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830806	chr6:130938330-131107137	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv604664	chr6:131004998-131115817	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131029000-131029600	Enhancers	Fetal Kidney	kidney
2	chr6:131029000-131029800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:131029000-131030000	Enhancers	Primary hematopoietic stem cells	blood
4	chr6:131029000-131030000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:131029000-131030200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:131029200-131029600	Enhancers	HUVEC	blood vessel
7	chr6:131029200-131029800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:131029200-131029800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:131029200-131029800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:131029200-131029800	Enhancers	Fetal Stomach	stomach
11	chr6:131029200-131029800	Enhancers	Small Intestine	intestine
12	chr6:131029200-131030000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr6:131029200-131030000	Enhancers	Primary T cells from cord blood	blood
14	chr6:131029200-131030000	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr6:131029200-131030000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr6:131029200-131030000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:131029200-131030000	Enhancers	Dnd41	blood
18	chr6:131029200-131030200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:131029200-131030200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:131029200-131030200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:131029400-131029800	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr6:131029400-131030000	Enhancers	HUES6 Cell Line	embryonic stem cell

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