Variant report

Variant	rs28581598
Chromosome Location	chr4:20370473-20370474
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10000297	0.96[EUR][1000 genomes]
rs10212858	0.88[ASN][1000 genomes]
rs12503652	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12512717	0.81[EUR][1000 genomes]
rs3924655	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4697163	0.89[EUR][1000 genomes]
rs4697165	0.84[EUR][1000 genomes]
rs58036148	0.83[EUR][1000 genomes]
rs58281777	0.85[EUR][1000 genomes]
rs60472094	0.91[EUR][1000 genomes]
rs9884539	0.94[AFR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842873	chr4:20361842-20399168	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20353800-20375600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:20358600-20371000	Weak transcription	Brain Anterior Caudate	brain
3	chr4:20364000-20370800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:20364000-20375400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:20365600-20370800	Weak transcription	Brain Substantia Nigra	brain
6	chr4:20366000-20375600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr4:20366400-20371000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr4:20367000-20370800	Weak transcription	Brain Hippocampus Middle	brain
9	chr4:20367000-20371000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:20368200-20372600	Enhancers	NHLF	lung
11	chr4:20368400-20372200	Enhancers	NHDF-Ad	bronchial
12	chr4:20368600-20370800	Enhancers	Fetal Lung	lung
13	chr4:20368600-20372400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr4:20368800-20371000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:20369200-20371000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:20369400-20372400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:20369600-20370600	Weak transcription	Aorta	Aorta
18	chr4:20369600-20370800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr4:20369600-20370800	Weak transcription	Pancreas	Pancrea
20	chr4:20369600-20371000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr4:20369600-20371000	Weak transcription	Spleen	Spleen
22	chr4:20369800-20375600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr4:20370200-20372200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr4:20370200-20372400	Enhancers	Fetal Stomach	stomach
25	chr4:20370400-20370600	Flanking Active TSS	Osteobl	bone
26	chr4:20370400-20371200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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