Variant report

Variant	rs58036148
Chromosome Location	chr4:20427494-20427495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10000297	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12512717	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28581598	0.83[EUR][1000 genomes]
rs3924655	0.83[EUR][1000 genomes]
rs4697165	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs58281777	0.85[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs60021161	0.90[EUR][1000 genomes]
rs60472094	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs884770	1.00[ASN][1000 genomes]
rs9884539	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20420800-20427600	Weak transcription	Brain Hippocampus Middle	brain
2	chr4:20420800-20433400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:20421000-20433600	Weak transcription	Aorta	Aorta
4	chr4:20421200-20430400	Weak transcription	NHLF	lung
5	chr4:20421200-20431800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:20421400-20433400	Weak transcription	Brain Anterior Caudate	brain
7	chr4:20422400-20429600	Weak transcription	Brain Substantia Nigra	brain
8	chr4:20423600-20428600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr4:20423600-20431800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr4:20424000-20427600	Weak transcription	Fetal Lung	lung
11	chr4:20424800-20428200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:20424800-20429000	Weak transcription	NHDF-Ad	bronchial
13	chr4:20424800-20431800	Weak transcription	Osteobl	bone
14	chr4:20425600-20431200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:20427200-20432200	Weak transcription	Hela-S3	cervix
16	chr4:20427400-20427600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:20427400-20428000	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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