Variant report

Variant	rs884770
Chromosome Location	chr4:20447040-20447041
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10000297	1.00[ASN][1000 genomes]
rs12503652	0.81[JPT][hapmap]
rs12512717	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs58036148	1.00[ASN][1000 genomes]
rs60472094	1.00[ASN][1000 genomes]
rs9884539	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878741	chr4:20440476-20486230	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv527095	chr4:20447040-20455955	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20444000-20449000	Enhancers	Colon Smooth Muscle	Colon
2	chr4:20444200-20449600	Enhancers	Fetal Lung	lung
3	chr4:20444800-20447600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:20445600-20447400	Weak transcription	Fetal Kidney	kidney
5	chr4:20446200-20447400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr4:20446200-20449200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:20446600-20447400	Weak transcription	Fetal Stomach	stomach
8	chr4:20446600-20447800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:20446600-20447800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:20446600-20448200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:20446800-20447200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr4:20446800-20447800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr4:20447000-20448800	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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