Variant report

Variant	rs9884539
Chromosome Location	chr4:20380257-20380258
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10000297	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12503652	0.81[GIH][hapmap];0.81[JPT][hapmap];0.92[MEX][hapmap];0.88[MKK][hapmap];0.88[TSI][hapmap]
rs12512717	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28581598	0.94[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs3924655	0.85[CEU][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];0.99[EUR][1000 genomes]
rs4697163	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4697165	0.92[MEX][hapmap];0.83[EUR][1000 genomes]
rs58036148	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58281777	0.83[EUR][1000 genomes]
rs60472094	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs884770	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842873	chr4:20361842-20399168	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20376200-20386600	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:20376400-20381200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:20376600-20386000	Weak transcription	Fetal Lung	lung
4	chr4:20379200-20380800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:20379400-20382800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:20380200-20392600	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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