Variant report

Variant	rs12512717
Chromosome Location	chr4:20449765-20449766
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10000297	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12503652	0.81[JPT][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap]
rs28581598	0.81[EUR][1000 genomes]
rs3924655	0.83[MEX][hapmap];0.81[EUR][1000 genomes]
rs4697165	0.84[MEX][hapmap];0.91[MKK][hapmap];0.82[EUR][1000 genomes]
rs58036148	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58281777	0.96[EUR][1000 genomes]
rs60021161	0.87[EUR][1000 genomes]
rs60472094	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs884770	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9884539	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878741	chr4:20440476-20486230	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv527095	chr4:20447040-20455955	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20447800-20454000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:20447800-20457800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:20448000-20454000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:20448000-20456600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:20448800-20457600	Weak transcription	NHDF-Ad	bronchial
6	chr4:20449400-20453200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:20449600-20486000	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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