Variant report
| Variant | rs28585621 |
|---|---|
| Chromosome Location | chr15:54640072-54640073 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs12101515 | 1.00[EUR][1000 genomes] |
| rs12102022 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12102026 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1589315 | 1.00[EUR][1000 genomes] |
| rs28369578 | 1.00[EUR][1000 genomes] |
| rs28414510 | 1.00[EUR][1000 genomes] |
| rs28440101 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28489023 | 0.93[AFR][1000 genomes] |
| rs28502057 | 1.00[EUR][1000 genomes] |
| rs28533229 | 1.00[EUR][1000 genomes] |
| rs28649518 | 1.00[EUR][1000 genomes] |
| rs28650843 | 1.00[EUR][1000 genomes] |
| rs28662932 | 1.00[EUR][1000 genomes] |
| rs28837800 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28866807 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7167636 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7170707 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs8024574 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8038891 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9920417 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv817539 | chr15:54132584-55095235 | Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | esv1845471 | chr15:54556063-54685463 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv974495 | chr15:54639855-54641537 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:54547000-54652600 | Weak transcription | Fetal Lung | lung |
