Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12101515	1.00[EUR][1000 genomes]
rs12102022	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1589315	1.00[EUR][1000 genomes]
rs28369578	1.00[EUR][1000 genomes]
rs28414510	1.00[EUR][1000 genomes]
rs28440101	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28489023	0.83[AFR][1000 genomes]
rs28502057	1.00[EUR][1000 genomes]
rs28533229	1.00[EUR][1000 genomes]
rs28585621	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28649518	1.00[EUR][1000 genomes]
rs28650843	1.00[EUR][1000 genomes]
rs28662932	1.00[EUR][1000 genomes]
rs28837800	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28866807	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs497723	0.88[AFR][1000 genomes]
rs501022	0.90[AFR][1000 genomes]
rs517562	0.92[AFR][1000 genomes]
rs547426	0.82[AFR][1000 genomes]
rs7167636	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7170707	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8024574	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8038891	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9920417	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv904230	chr15:54685463-54779312	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv457150	chr15:54685463-54787358	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv569501	chr15:54685463-54787358	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54680200-54690200	Weak transcription	Aorta	Aorta
2	chr15:54685600-54694800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search: