Variant report

Variant	rs8024574
Chromosome Location	chr15:54657246-54657247
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12102022	1.00[AMR][1000 genomes]
rs12102026	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28440101	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28489023	0.97[AFR][1000 genomes]
rs28585621	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28837800	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28866807	1.00[AMR][1000 genomes]
rs7167636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7170707	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8038891	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9920417	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1845471	chr15:54556063-54685463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54654600-54664400	Weak transcription	Aorta	Aorta
2	chr15:54654600-54665600	Weak transcription	Fetal Lung	lung
3	chr15:54656600-54657400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr15:54656800-54657400	Enhancers	Fetal Brain Female	brain
5	chr15:54656800-54657600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr15:54657000-54657400	Active TSS	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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