Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:54685449..54687612-chr15:54692436..54693986,2	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12102026	0.82[AFR][1000 genomes]
rs12442840	0.86[CEU][hapmap]
rs12916498	0.90[CEU][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1849210	0.86[CHD][hapmap]
rs28440101	0.81[AFR][1000 genomes]
rs28489023	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28837800	0.85[AFR][1000 genomes]
rs28866807	0.90[AFR][1000 genomes]
rs34419514	0.89[ASN][1000 genomes]
rs472338	0.87[ASN][1000 genomes]
rs497723	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs500198	0.95[CEU][hapmap]
rs501022	0.91[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs517562	0.95[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs569024	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs572886	0.82[ASW][hapmap];1.00[YRI][hapmap]
rs573320	0.83[ASW][hapmap];0.95[CEU][hapmap];0.93[CHD][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap]
rs573565	1.00[CEU][hapmap]
rs580558	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs6493679	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7170707	1.00[YRI][hapmap]
rs8042489	0.83[YRI][hapmap]
rs9920417	1.00[YRI][hapmap];0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv904230	chr15:54685463-54779312	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv457150	chr15:54685463-54787358	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv569501	chr15:54685463-54787358	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54685600-54694800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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