Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12102026	0.83[AFR][1000 genomes]
rs12442840	0.86[CEU][hapmap]
rs12916498	0.90[CEU][hapmap];0.85[CHB][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1849210	0.86[CHB][hapmap]
rs28489023	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28585621	0.93[AFR][1000 genomes]
rs34419514	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs497723	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs500198	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs501022	0.91[CEU][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs517562	0.95[CEU][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs547426	1.00[CEU][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs569024	0.95[CEU][hapmap];0.85[CHB][hapmap];0.83[YRI][hapmap]
rs572886	0.82[YRI][hapmap]
rs573320	0.95[CEU][hapmap];0.85[CHB][hapmap];0.82[YRI][hapmap]
rs573565	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6493679	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7167636	0.97[AFR][1000 genomes]
rs7170707	0.83[YRI][hapmap]
rs8024574	0.97[AFR][1000 genomes]
rs8038891	0.88[AFR][1000 genomes]
rs8042489	1.00[YRI][hapmap]
rs9920417	0.83[YRI][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1845471	chr15:54556063-54685463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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