Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12102022	1.00[AMR][1000 genomes]
rs12102026	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28440101	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28489023	0.94[AFR][1000 genomes]
rs28585621	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28837800	1.00[AMR][1000 genomes]
rs28866807	1.00[AMR][1000 genomes]
rs497723	0.84[YRI][hapmap]
rs500198	0.93[YRI][hapmap]
rs501022	0.84[YRI][hapmap]
rs517562	0.84[YRI][hapmap]
rs547426	0.83[YRI][hapmap]
rs569024	0.84[YRI][hapmap]
rs572886	0.83[YRI][hapmap]
rs573320	0.83[YRI][hapmap]
rs580558	1.00[YRI][hapmap]
rs7167636	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7170707	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs8024574	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8038891	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9920417	0.84[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1845471	chr15:54556063-54685463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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