Variant report

Variant	rs28607562
Chromosome Location	chr9:84848788-84848789
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10119007	0.84[AFR][1000 genomes]
rs10119281	0.84[AFR][1000 genomes]
rs12339516	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12342821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12343022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12349460	0.84[AFR][1000 genomes]
rs28469416	0.88[AFR][1000 genomes]
rs28532147	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28560336	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57207574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59916459	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049305	chr9:84667596-84918690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831640	chr9:84695958-84880535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv893507	chr9:84799537-85097651	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84848600-84849200	Enhancers	Primary hematopoietic stem cells	blood
2	chr9:84848600-84849200	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr9:84848600-84849600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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