Variant report

Variant	rs28560336
Chromosome Location	chr9:84751112-84751113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12339516	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12342821	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12343022	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28532147	1.00[AMR][1000 genomes]
rs28607562	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57207574	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9314707	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049305	chr9:84667596-84918690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831640	chr9:84695958-84880535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84749400-84752600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr9:84749400-84753600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:84749600-84753200	Weak transcription	NHDF-Ad	bronchial
4	chr9:84749600-84754800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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