Variant report

Variant	rs28532147
Chromosome Location	chr9:84671192-84671193
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12339516	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12342821	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12343022	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12349460	0.80[AFR][1000 genomes]
rs28560336	1.00[AMR][1000 genomes]
rs28607562	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57207574	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9314707	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049305	chr9:84667596-84918690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv968712	chr9:84667794-84682249	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84669600-84676200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links