Variant report

Variant	rs9314707
Chromosome Location	chr9:84521498-84521499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11139470	1.00[MEX][hapmap];0.87[YRI][hapmap]
rs12339516	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12342821	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28532147	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28560336	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57207574	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831639	chr9:84501548-84651151	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv508555	chr9:84507699-84580028	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv1820579	chr9:84518394-84556369	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1849322	chr9:84518394-84564267	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv8534	chr9:84519710-84526613	Enhancers Flanking Active TSS Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
6	esv1800180	chr9:84519751-84557638	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84521200-84522200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr9:84521400-84521800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:84521400-84521800	Enhancers	NH-A	brain
4	chr9:84521400-84521800	Enhancers	Osteobl	bone
5	chr9:84521400-84522000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:84521400-84522400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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