Variant report

Variant	rs12339516
Chromosome Location	chr9:84739513-84739514
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10119007	0.80[AFR][1000 genomes]
rs10119281	0.80[AFR][1000 genomes]
rs12342821	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12343022	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12349460	0.80[AFR][1000 genomes]
rs28469416	0.85[AFR][1000 genomes]
rs28532147	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28560336	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28607562	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57207574	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59916459	0.80[AFR][1000 genomes]
rs9314707	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049305	chr9:84667596-84918690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831640	chr9:84695958-84880535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84732600-84743400	Weak transcription	Fetal Brain Male	brain
2	chr9:84732800-84744600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:84738600-84740400	Weak transcription	Fetal Lung	lung
4	chr9:84739000-84742800	Enhancers	Primary B cells from cord blood	blood
5	chr9:84739000-84749000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:84739200-84739600	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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