Variant report

Variant	rs28630064
Chromosome Location	chr15:50294088-50294089
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12591825	1.00[ASN][1000 genomes]
rs16953000	1.00[ASN][1000 genomes]
rs16963141	1.00[ASN][1000 genomes]
rs16963180	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963231	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963240	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963254	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2414001	1.00[ASN][1000 genomes]
rs7177104	1.00[ASN][1000 genomes]
rs7182041	1.00[ASN][1000 genomes]
rs8028405	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8030284	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv904207	chr15:50290295-50352945	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50278000-50301600	Weak transcription	Liver	Liver
2	chr15:50282000-50295600	Weak transcription	Adipose Nuclei	Adipose
3	chr15:50287400-50294400	Weak transcription	Fetal Stomach	stomach
4	chr15:50287600-50296000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr15:50291600-50294600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr15:50291600-50294600	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr15:50291800-50294800	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr15:50291800-50296200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr15:50292600-50294200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr15:50292600-50295600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr15:50292800-50294400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr15:50293600-50296200	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr15:50293600-50296400	Enhancers	Colon Smooth Muscle	Colon
14	chr15:50293600-50297200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:50293800-50294400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr15:50293800-50295800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr15:50293800-50296000	Weak transcription	Ovary	ovary
18	chr15:50294000-50294800	Enhancers	Rectal Smooth Muscle	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links