Variant report

Variant	rs16963141
Chromosome Location	chr15:50274155-50274156
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11639118	1.00[CHB][hapmap]
rs12591825	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12905605	1.00[CHB][hapmap]
rs16953000	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963180	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16963231	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16963240	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16963254	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2414001	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs28630064	1.00[ASN][1000 genomes]
rs7168544	1.00[CHB][hapmap]
rs7177104	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7182041	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs8028405	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs8030284	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv904205	chr15:50228476-50286981	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv904206	chr15:50235163-50275011	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv457133	chr15:50235163-50275056	ZNF genes & repeats Strong transcription Enhancers Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv569394	chr15:50235163-50275056	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50262800-50278200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr15:50265800-50277800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr15:50267600-50277800	Weak transcription	Spleen	Spleen
4	chr15:50268600-50276800	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr15:50268600-50277600	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr15:50268600-50281000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr15:50268600-50290400	Strong transcription	Primary hematopoietic stem cells	blood
8	chr15:50273200-50280000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr15:50273600-50274400	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr15:50273600-50275000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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