Variant report

Variant	rs11639118
Chromosome Location	chr15:50175573-50175574
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:50175289-50175714	H1-neurons	neurons:	n/a	n/a
2	POLR2A	chr15:50175334-50175745	H1-neurons	neurons:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:50152597..50155381-chr15:50174380..50176402,2	MCF-7	breast:
2	chr15:50137595..50140472-chr15:50174008..50176378,2	K562	blood:
3	chr15:50169136..50174439-chr15:50175457..50178803,5	MCF-7	breast:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FGF7-1	chr15:50175415-50175693	NONHSAT042394
2	lnc-FGF7-1	chr15:50175415-50175720	ENSG00000259188.1
3	lnc-FGF7-1	chr15:50175360-50175722	ENSG00000259188.1
4	lnc-FGF7-1	chr15:50175360-50175693	NONHSAT042392
5	lnc-FGF7-1	chr15:50175415-50175693	NONHSAT042395
6	lnc-FGF7-1	chr15:50175363-50175693	NONHSAT042393

No data

Variant related genes	Relation type
ATP8B4	TF binding region
ENSG00000259188	Chromatin interaction
ENSG00000104043	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12591825	1.00[CHB][hapmap]
rs12905605	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16953000	1.00[CHB][hapmap]
rs16963141	1.00[CHB][hapmap]
rs16963180	1.00[CHB][hapmap]
rs16963231	1.00[CHB][hapmap]
rs16963240	1.00[CHB][hapmap]
rs16963254	1.00[CHB][hapmap]
rs2414001	1.00[CHB][hapmap]
rs34608510	1.00[ASN][1000 genomes]
rs548780	1.00[ASN][1000 genomes]
rs62022673	1.00[ASN][1000 genomes]
rs66937472	1.00[ASN][1000 genomes]
rs691944	1.00[ASN][1000 genomes]
rs71469669	1.00[ASN][1000 genomes]
rs7177104	1.00[CHB][hapmap]
rs7182041	1.00[CHB][hapmap]
rs8028405	1.00[CHB][hapmap]
rs8030284	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv833003	chr15:50100372-50273309	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50135200-50181400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr15:50135800-50187400	Weak transcription	Liver	Liver
3	chr15:50138200-50189800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:50145600-50200400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr15:50149400-50198000	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr15:50161600-50175600	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr15:50161800-50179000	Strong transcription	Primary hematopoietic stem cells	blood
8	chr15:50161800-50210600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr15:50163000-50200400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr15:50167600-50200800	Weak transcription	Spleen	Spleen
11	chr15:50169800-50175600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr15:50170000-50175800	Weak transcription	Aorta	Aorta
13	chr15:50170600-50175600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr15:50171200-50179800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr15:50171200-50195200	Weak transcription	Placenta	Placenta
16	chr15:50172200-50177600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr15:50172600-50180200	Weak transcription	Ovary	ovary
18	chr15:50174600-50179400	Weak transcription	Fetal Muscle Leg	muscle
19	chr15:50174600-50179600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:50174600-50187000	Weak transcription	Adipose Nuclei	Adipose
21	chr15:50175400-50176600	Enhancers	HUES64 Cell Line	embryonic stem cell

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