Variant report

Variant	rs8028405
Chromosome Location	chr15:50286609-50286610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11639118	1.00[CHB][hapmap]
rs12591825	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12905605	1.00[CHB][hapmap]
rs16953000	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16963141	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16963180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963240	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963254	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2414001	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs28630064	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4356419	0.90[CEU][hapmap]
rs7168544	1.00[CHB][hapmap]
rs7177104	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7182041	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs8025172	0.91[CEU][hapmap]
rs8030284	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv904205	chr15:50228476-50286981	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50268600-50290400	Strong transcription	Primary hematopoietic stem cells	blood
2	chr15:50278000-50301600	Weak transcription	Liver	Liver
3	chr15:50280400-50288000	Weak transcription	Fetal Muscle Leg	muscle
4	chr15:50281200-50290200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr15:50282000-50287000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr15:50282000-50295600	Weak transcription	Adipose Nuclei	Adipose
7	chr15:50282200-50290400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr15:50282600-50289600	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr15:50283000-50290800	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr15:50283200-50290000	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr15:50283400-50290400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:50284600-50287000	Weak transcription	Fetal Stomach	stomach
13	chr15:50284800-50288000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr15:50285600-50288600	Enhancers	Colon Smooth Muscle	Colon
15	chr15:50286200-50287400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr15:50286400-50287200	Enhancers	Stomach Smooth Muscle	stomach
17	chr15:50286400-50290200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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