Variant report

Variant	rs12905605
Chromosome Location	chr15:50374529-50374530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:50371975..50373959-chr15:50374095..50376728,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1050571	1.00[CHB][hapmap]
rs11639118	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11856059	1.00[CHB][hapmap]
rs12591825	1.00[CHB][hapmap]
rs16953000	1.00[CHB][hapmap]
rs16963141	1.00[CHB][hapmap]
rs16963180	1.00[CHB][hapmap]
rs16963231	1.00[CHB][hapmap]
rs16963240	1.00[CHB][hapmap]
rs16963254	1.00[CHB][hapmap]
rs17416784	1.00[CHB][hapmap]
rs17740669	1.00[CHB][hapmap]
rs2414001	1.00[CHB][hapmap]
rs34608510	1.00[ASN][1000 genomes]
rs56328913	1.00[ASN][1000 genomes]
rs58724726	1.00[ASN][1000 genomes]
rs60706355	1.00[ASN][1000 genomes]
rs66937472	1.00[ASN][1000 genomes]
rs71469669	1.00[ASN][1000 genomes]
rs71469678	1.00[ASN][1000 genomes]
rs7168544	1.00[CHB][hapmap]
rs7177104	1.00[CHB][hapmap]
rs7182041	1.00[CHB][hapmap]
rs74012175	1.00[ASN][1000 genomes]
rs74012177	1.00[ASN][1000 genomes]
rs74012892	1.00[ASN][1000 genomes]
rs74012898	1.00[ASN][1000 genomes]
rs74012900	1.00[ASN][1000 genomes]
rs74012902	1.00[ASN][1000 genomes]
rs74015203	1.00[ASN][1000 genomes]
rs74015210	1.00[ASN][1000 genomes]
rs8028405	1.00[CHB][hapmap]
rs8030284	1.00[CHB][hapmap]
rs8042084	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv569395	chr15:50345393-50437494	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50367200-50380600	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr15:50367400-50381600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr15:50368000-50380800	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr15:50370000-50375000	Weak transcription	NHDF-Ad	bronchial
5	chr15:50370600-50375200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr15:50372400-50375000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr15:50373800-50377000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:50373800-50377800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr15:50374000-50375200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr15:50374400-50378000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood

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