Variant report

Variant	rs12591825
Chromosome Location	chr15:50311135-50311136
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:50300655..50303212-chr15:50310956..50313515,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11633071	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11639118	1.00[CHB][hapmap]
rs11854435	0.92[CEU][hapmap];0.86[TSI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12905605	1.00[CHB][hapmap]
rs16953000	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16963141	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16963180	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16963231	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16963240	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16963254	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2414000	0.84[EUR][1000 genomes]
rs2414001	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.96[LWK][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2414005	0.83[TSI][hapmap]
rs2414006	0.89[GIH][hapmap];0.82[TSI][hapmap]
rs2414008	0.92[GIH][hapmap];0.85[TSI][hapmap]
rs28630064	1.00[ASN][1000 genomes]
rs6493394	0.92[GIH][hapmap];0.82[TSI][hapmap]
rs7168544	1.00[CHB][hapmap]
rs7177104	0.81[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.97[MKK][hapmap];0.93[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7182041	0.87[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8028405	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs8030284	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9302151	0.92[GIH][hapmap];0.81[TSI][hapmap]
rs935196	0.82[AMR][1000 genomes]
rs935197	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv904207	chr15:50290295-50352945	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1530	chr15:50302524-50347616	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50296200-50314200	Strong transcription	Primary hematopoietic stem cells	blood
2	chr15:50296400-50311200	Weak transcription	Placenta	Placenta
3	chr15:50296400-50314600	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr15:50296800-50335200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr15:50297400-50334600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr15:50302200-50314000	Weak transcription	Liver	Liver
7	chr15:50307400-50320800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:50309200-50312200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr15:50309200-50313400	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr15:50309200-50316600	Weak transcription	Right Atrium	heart
11	chr15:50310400-50314800	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr15:50310600-50313200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr15:50311000-50316000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr15:50311000-50316400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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