Variant report

Variant	rs28657879
Chromosome Location	chr16:34582199-34582200
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CTD-2144E22.5.1-24	chr16:34581756-34582668	NONHSAT142180

Extended variants
information (count: 533 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10871269	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1207744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12716730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12918819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13330248	1.00[AMR][1000 genomes]
rs13337844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1386081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2100234	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2167187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2263415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs237978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs237996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs238004	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs238006	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2450384	1.00[AMR][1000 genomes]
rs2623781	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2623784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2623785	1.00[AMR][1000 genomes]
rs2623787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2630989	1.00[AMR][1000 genomes]
rs2630991	1.00[AMR][1000 genomes]
rs2630992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2630998	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2631001	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2631002	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28421631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28651320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28685213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28739483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61732069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6420379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6563863	1.00[AMR][1000 genomes]
rs6563864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6563867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7193135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7199098	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7206318	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7404633	1.00[AMR][1000 genomes]
rs7498126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7500004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7500312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8053372	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs849729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9923423	1.00[AMR][1000 genomes]
rs9924139	1.00[AMR][1000 genomes]
rs9925650	1.00[AMR][1000 genomes]
rs9935448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9937313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9940281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:482 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431453	chr16:33940200-34760967	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	74 gene(s)	inside rSNPs	diseases
2	nsv906655	chr16:34176875-34597156	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	nsv1056658	chr16:34197339-34682514	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv917674	chr16:34201887-34682588	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
5	nsv1067686	chr16:34202088-35147508	ZNF genes & repeats Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
6	nsv532260	chr16:34202088-35147508	Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
7	nsv521817	chr16:34221454-35168832	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
8	nsv521994	chr16:34221454-35168832	Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
9	nsv516385	chr16:34259805-34805859	ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
10	esv2751557	chr16:34263599-34757071	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
11	nsv431454	chr16:34321463-34790434	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
12	nsv428326	chr16:34357763-34769642	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
13	nsv431455	chr16:34359599-34796499	ZNF genes & repeats Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
14	esv2758422	chr16:34362213-34769642	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
15	nsv143	chr16:34378952-34732704	Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
16	nsv144	chr16:34390796-34715796	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
17	esv2751558	chr16:34410569-34757071	Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
18	esv2756010	chr16:34421701-34733876	Enhancers ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
19	nsv431456	chr16:34421701-34733876	Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
20	nsv431458	chr16:34421701-34760999	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
21	esv2752478	chr16:34424309-34733876	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
22	nsv917579	chr16:34427599-34727491	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
23	nsv534678	chr16:34427859-34682448	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
24	nsv497944	chr16:34427916-34727365	ZNF genes & repeats Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
25	nsv428652	chr16:34431651-34632711	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
26	nsv833212	chr16:34433963-34634327	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
27	esv2757636	chr16:34436185-35042935	ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
28	esv2754304	chr16:34437589-34617523	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
29	nsv431459	chr16:34437589-34702500	Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
30	esv2751559	chr16:34437589-34733876	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
31	esv2751560	chr16:34437589-34733876	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
32	esv2751561	chr16:34437589-34733876	ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
33	esv2751562	chr16:34437589-34733876	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
34	esv2752459	chr16:34437589-34733876	ZNF genes & repeats Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
35	esv2752461	chr16:34437589-34733876	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
36	esv2753294	chr16:34437589-34733876	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
37	esv2753385	chr16:34437589-34733876	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
38	esv2753586	chr16:34437589-34733876	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
39	esv2753677	chr16:34437589-34733876	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
40	esv2754381	chr16:34437589-34733876	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
41	esv2755295	chr16:34437589-34733876	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
42	esv2755592	chr16:34437589-34733876	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
43	esv2755802	chr16:34437589-34733876	ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
44	esv2756463	chr16:34437589-34733876	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
45	esv2756673	chr16:34437589-34733876	ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
46	esv2751563	chr16:34437589-34757071	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
47	esv2751564	chr16:34437589-34757071	ZNF genes & repeats Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
48	esv2751565	chr16:34437589-34757071	Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
49	esv2751566	chr16:34437589-34757071	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
50	esv2751567	chr16:34437589-34757071	Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

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Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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