Variant report

Variant	rs2866185
Chromosome Location	chr4:101072734-101072735
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12513071	0.93[EUR][1000 genomes]
rs12640004	0.85[JPT][hapmap]
rs12650258	0.81[EUR][1000 genomes]
rs2866184	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2866188	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2866190	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4380532	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4532240	0.81[EUR][1000 genomes]
rs4699775	0.83[CEU][hapmap]
rs55728175	0.81[EUR][1000 genomes]
rs55907205	0.81[EUR][1000 genomes]
rs55915722	0.81[EUR][1000 genomes]
rs56186276	0.81[EUR][1000 genomes]
rs62306138	0.81[EUR][1000 genomes]
rs62306147	0.91[EUR][1000 genomes]
rs62306151	0.93[EUR][1000 genomes]
rs6823618	0.91[EUR][1000 genomes]
rs6855061	1.00[CEU][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.87[TSI][hapmap]
rs7675143	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427689	chr4:100931741-101216531	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830019	chr4:101023666-101208908	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2866185	TACR3	cis	cerebellum	SCAN
rs2866185	DDIT4L	cis	lymphoblastoid	seeQTL
rs2866185	DDIT4L	cis	multi-tissue	Pritchard

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101072000-101073000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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