Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12502279	0.86[ASN][1000 genomes]
rs12505112	0.99[ASN][1000 genomes]
rs12506869	0.83[ASN][1000 genomes]
rs12513071	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12640004	0.85[ASN][1000 genomes]
rs12642221	0.99[ASN][1000 genomes]
rs12649533	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12650258	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2866184	0.90[EUR][1000 genomes]
rs2866185	0.91[EUR][1000 genomes]
rs2866188	0.90[EUR][1000 genomes]
rs2866190	0.90[EUR][1000 genomes]
rs4235443	0.99[ASN][1000 genomes]
rs4380532	0.90[EUR][1000 genomes]
rs4532240	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55666457	1.00[ASN][1000 genomes]
rs55728175	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55907205	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55915722	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56186276	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62306138	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62306149	0.82[EUR][1000 genomes]
rs62306151	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6823618	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7675143	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427689	chr4:100931741-101216531	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830019	chr4:101023666-101208908	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101034200-101037400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr4:101034200-101037800	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr4:101034400-101037000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:101035000-101037200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr4:101035200-101036200	Weak transcription	Brain Anterior Caudate	brain
6	chr4:101035400-101036200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr4:101035400-101036200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:101035400-101036600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:101035800-101037200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr4:101035800-101037600	Enhancers	Fetal Kidney	kidney
11	chr4:101036000-101036400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr4:101036000-101036800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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