Variant report

Variant	rs7675143
Chromosome Location	chr4:101027147-101027148
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100868231..100870491-chr4:101024426..101027309,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12502279	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12505112	0.99[ASN][1000 genomes]
rs12506869	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12512658	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12513071	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12640004	0.84[CHB][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12642221	0.99[ASN][1000 genomes]
rs12649533	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12650258	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2866184	0.81[EUR][1000 genomes]
rs2866185	0.81[EUR][1000 genomes]
rs2866188	0.81[EUR][1000 genomes]
rs2866190	0.81[EUR][1000 genomes]
rs4235443	0.99[ASN][1000 genomes]
rs4380532	0.81[EUR][1000 genomes]
rs4532240	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55666457	1.00[ASN][1000 genomes]
rs55728175	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55907205	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55915722	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56186276	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62306138	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62306147	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62306151	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6823618	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6855061	0.89[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427689	chr4:100931741-101216531	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830018	chr4:100977238-101027920	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830019	chr4:101023666-101208908	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7675143	DDIT4L	cis	multi-tissue	Pritchard

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101007800-101028000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:101022600-101027600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr4:101022600-101027800	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr4:101022600-101027800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr4:101022600-101027800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr4:101022600-101027800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:101022600-101027800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr4:101022600-101028000	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr4:101022600-101028000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr4:101022600-101028000	Weak transcription	Fetal Thymus	thymus
11	chr4:101022600-101030200	Weak transcription	Fetal Intestine Large	intestine
12	chr4:101022800-101027800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr4:101022800-101028000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr4:101022800-101028000	Weak transcription	GM12878-XiMat	blood
15	chr4:101023000-101027600	Weak transcription	Dnd41	blood
16	chr4:101023000-101027800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr4:101023400-101027400	Weak transcription	Primary B cells from peripheral blood	blood
18	chr4:101024000-101027600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr4:101026600-101027600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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