Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12502279	0.86[ASN][1000 genomes]
rs12505112	0.99[ASN][1000 genomes]
rs12506869	0.83[ASN][1000 genomes]
rs12513071	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12640004	0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs12642221	0.99[ASN][1000 genomes]
rs12649533	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12650258	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2866184	0.90[EUR][1000 genomes]
rs2866185	0.91[EUR][1000 genomes]
rs2866188	0.90[EUR][1000 genomes]
rs2866190	0.90[EUR][1000 genomes]
rs4235443	0.99[ASN][1000 genomes]
rs4380532	0.90[EUR][1000 genomes]
rs4532240	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4699775	0.82[CEU][hapmap]
rs55666457	1.00[ASN][1000 genomes]
rs55728175	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55907205	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55915722	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56186276	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62306138	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62306147	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62306149	0.82[EUR][1000 genomes]
rs62306151	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6855061	1.00[CEU][hapmap];0.95[JPT][hapmap]
rs7675143	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427689	chr4:100931741-101216531	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830019	chr4:101023666-101208908	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101022600-101030200	Weak transcription	Fetal Intestine Large	intestine
2	chr4:101027400-101030000	Enhancers	Primary B cells from peripheral blood	blood
3	chr4:101027600-101030200	Enhancers	Primary B cells from cord blood	blood
4	chr4:101028600-101030000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr4:101028600-101030000	Weak transcription	Thymus	Thymus
6	chr4:101028800-101029800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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