Variant report

Variant	rs55666457
Chromosome Location	chr4:101028262-101028263
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12502279	0.86[ASN][1000 genomes]
rs12505112	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12506869	0.83[ASN][1000 genomes]
rs12513071	0.87[ASN][1000 genomes]
rs12640004	0.85[ASN][1000 genomes]
rs12642221	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12649533	0.98[ASN][1000 genomes]
rs12650258	0.99[ASN][1000 genomes]
rs4235443	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4532240	0.99[ASN][1000 genomes]
rs55728175	0.99[ASN][1000 genomes]
rs55907205	0.99[ASN][1000 genomes]
rs55915722	0.99[ASN][1000 genomes]
rs56186276	0.99[ASN][1000 genomes]
rs62306138	0.99[ASN][1000 genomes]
rs62306147	1.00[ASN][1000 genomes]
rs62306151	0.87[ASN][1000 genomes]
rs6823618	1.00[ASN][1000 genomes]
rs7675143	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427689	chr4:100931741-101216531	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830019	chr4:101023666-101208908	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101022600-101030200	Weak transcription	Fetal Intestine Large	intestine
2	chr4:101027400-101030000	Enhancers	Primary B cells from peripheral blood	blood
3	chr4:101027600-101028600	Enhancers	Primary T cells from cord blood	blood
4	chr4:101027600-101028600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr4:101027600-101028800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr4:101027600-101030200	Enhancers	Primary B cells from cord blood	blood
7	chr4:101027800-101028400	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr4:101027800-101028400	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr4:101027800-101028400	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr4:101027800-101028600	Enhancers	Primary T cells fromperipheralblood	blood
11	chr4:101027800-101028600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr4:101027800-101028600	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr4:101027800-101028600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:101027800-101028800	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr4:101028000-101028400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr4:101028000-101028400	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr4:101028000-101028400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr4:101028000-101028400	Flanking Active TSS	Dnd41	blood
19	chr4:101028000-101028400	Enhancers	GM12878-XiMat	blood
20	chr4:101028000-101028600	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr4:101028000-101028600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr4:101028000-101028600	Enhancers	Fetal Thymus	thymus
23	chr4:101028000-101028800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr4:101028200-101028600	Enhancers	Thymus	Thymus

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