Variant report

Variant	rs28678269
Chromosome Location	chr4:54634621-54634622
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10022751	0.95[ASN][1000 genomes]
rs11732262	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11736188	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17083453	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083478	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28538396	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28671441	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28722947	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4530695	0.95[ASN][1000 genomes]
rs62297725	0.95[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs73159227	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879015	chr4:54596466-54665559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv527672	chr4:54626228-54637201	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54630800-54635000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr4:54630800-54635800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:54631000-54635800	Enhancers	Osteobl	bone
4	chr4:54631600-54636200	Weak transcription	Colon Smooth Muscle	Colon
5	chr4:54631800-54635800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:54631800-54635800	Enhancers	NHDF-Ad	bronchial
7	chr4:54631800-54637200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr4:54632000-54635000	Weak transcription	Fetal Stomach	stomach
9	chr4:54633000-54636000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:54633400-54643200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:54634000-54635000	Weak transcription	NHLF	lung
12	chr4:54634200-54634800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:54634200-54635000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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