Variant report

Variant	rs62297725
Chromosome Location	chr4:54631405-54631406
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10022751	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083453	0.89[AFR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17083478	0.90[ASN][1000 genomes]
rs28538396	0.92[ASN][1000 genomes]
rs28671441	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs28678269	0.95[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs28722947	0.92[ASN][1000 genomes]
rs4530695	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62297702	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62297704	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62324661	0.84[EUR][1000 genomes]
rs6854877	0.84[EUR][1000 genomes]
rs73159227	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879015	chr4:54596466-54665559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv527672	chr4:54626228-54637201	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54629200-54631800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:54629200-54634400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr4:54629400-54631800	Enhancers	Ovary	ovary
4	chr4:54629400-54633800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr4:54629600-54631600	Enhancers	HSMMtube	muscle
6	chr4:54629600-54631800	Enhancers	HSMM	muscle
7	chr4:54629600-54631800	Enhancers	NH-A	brain
8	chr4:54629600-54632000	Enhancers	Fetal Stomach	stomach
9	chr4:54630000-54631800	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr4:54630200-54631600	Enhancers	Colon Smooth Muscle	Colon
11	chr4:54630200-54632200	Enhancers	Fetal Kidney	kidney
12	chr4:54630400-54632000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:54630600-54632400	Weak transcription	HMEC	breast
14	chr4:54630800-54631600	Enhancers	Fetal Lung	lung
15	chr4:54630800-54634000	Enhancers	NHLF	lung
16	chr4:54630800-54635000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr4:54630800-54635800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr4:54631000-54631600	Weak transcription	Placenta	Placenta
19	chr4:54631000-54631800	Enhancers	Liver	Liver
20	chr4:54631000-54632000	Enhancers	GM12878-XiMat	blood
21	chr4:54631000-54633000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr4:54631000-54635800	Enhancers	Osteobl	bone
23	chr4:54631200-54631600	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr4:54631200-54631800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr4:54631200-54631800	Flanking Active TSS	NHDF-Ad	bronchial
26	chr4:54631200-54632000	Enhancers	Primary B cells from peripheral blood	blood
27	chr4:54631400-54631800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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