Variant report

Variant	rs28722947
Chromosome Location	chr4:54652229-54652230
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10022751	0.92[ASN][1000 genomes]
rs11732262	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11736188	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17083453	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17083478	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28538396	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28671441	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28678269	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4530695	0.92[ASN][1000 genomes]
rs62297725	0.92[ASN][1000 genomes]
rs73159227	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879015	chr4:54596466-54665559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879016	chr4:54638218-54710952	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54644800-54652800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:54648400-54652400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:54648400-54652800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr4:54648600-54655600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:54649200-54652400	Weak transcription	Osteobl	bone
6	chr4:54649600-54652800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr4:54650600-54654600	Enhancers	NHDF-Ad	bronchial
8	chr4:54651000-54653600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:54651000-54654200	Enhancers	Fetal Stomach	stomach
10	chr4:54651400-54653600	Enhancers	Ovary	ovary
11	chr4:54651400-54654400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:54651400-54654600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:54651800-54653800	Enhancers	NHLF	lung
14	chr4:54651800-54654200	Enhancers	Placenta	Placenta
15	chr4:54652000-54652400	Weak transcription	Fetal Lung	lung
16	chr4:54652000-54652600	Weak transcription	Colon Smooth Muscle	Colon
17	chr4:54652000-54653600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr4:54652200-54653400	Enhancers	Fetal Muscle Leg	muscle
19	chr4:54652200-54653600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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