Variant report

Variant	rs73159227
Chromosome Location	chr4:54649755-54649756
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10022751	0.92[ASN][1000 genomes]
rs11732262	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11736188	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17083453	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17083478	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28538396	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28671441	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28678269	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28722947	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4530695	0.92[ASN][1000 genomes]
rs62297725	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879015	chr4:54596466-54665559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879016	chr4:54638218-54710952	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3379351	chr4:54646995-54650493	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54644800-54652800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:54646400-54650000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:54646600-54650200	Enhancers	NHDF-Ad	bronchial
4	chr4:54648400-54652400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:54648400-54652800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr4:54648600-54655600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:54648800-54651800	Weak transcription	Fetal Lung	lung
8	chr4:54649000-54652200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr4:54649200-54651000	Weak transcription	Fetal Stomach	stomach
10	chr4:54649200-54651400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr4:54649200-54652400	Weak transcription	Osteobl	bone
12	chr4:54649400-54649800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:54649600-54651800	Weak transcription	NHLF	lung
14	chr4:54649600-54652800	Weak transcription	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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