Variant report

Variant	rs28716641
Chromosome Location	chr8:91661635-91661636
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:10)
CpG islands
(count:61)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:10 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr8:91661564-91661871	H1-hESC	embryonic stem cell:	n/a	n/a
2	MAX	chr8:91661569-91661867	H1-hESC	embryonic stem cell:	n/a	n/a
3	FOS	chr8:91661570-91662125	HUVEC	blood vessel:	n/a	n/a
4	GATA3	chr8:91661589-91662224	MCF-7	breast:	n/a	n/a
5	FOS	chr8:91661601-91661881	MCF10A-Er-Src	breast:	n/a	n/a
6	TEAD4	chr8:91661598-91661912	H1-hESC	embryonic stem cell:	n/a	n/a
7	GATA3	chr8:91661528-91662196	MCF-7	breast:	n/a	n/a
8	ZNF217	chr8:91661568-91661940	MCF-7	breast:	n/a	n/a
9	FOS	chr8:91661635-91661880	MCF10A-Er-Src	breast:	n/a	n/a
10	FOS	chr8:91661587-91661881	MCF10A-Er-Src	breast:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr8:91661614-91661664	LNCaP	prostate:	n/a
2	chr8:91661614-91661664	Hela-S3	cervix:	n/a
3	chr8:91661614-91661664	NT2-D1	testis:	n/a
4	chr8:91661614-91661664	GM12878	blood:	n/a
5	chr8:91661614-91661664	U87	brain:	n/a
6	chr8:91661614-91661664	A549	lung:	n/a
7	chr8:91661614-91661664	NH-A	brain:	n/a
8	chr8:91661614-91661664	HepG2	liver:	n/a
9	chr8:91661614-91661664	HCF	heart:	n/a
10	chr8:91661614-91661664	SAEC	small airway:	n/a
11	chr8:91661614-91661664	K562	blood:	n/a
12	chr8:91661614-91661664	SK-N-MC	brain:	n/a
13	chr8:91661614-91661664	SK-N-SH_RA	brain:	n/a
14	chr8:91661614-91661664	Caco-2	colon:	n/a
15	chr8:91661614-91661664	BE2_C	brain:	n/a
16	chr8:91661614-91661664	HIPEpiC	eye:	n/a
17	chr8:91661614-91661664	GM19239	blood:	n/a
18	chr8:91661614-91661664	HNPCEpiC	eye:	n/a
19	chr8:91661614-91661664	T-47D	breast:	n/a
20	chr8:91661614-91661664	HRPEpiC	eye:	n/a
21	chr8:91661614-91661664	AG04450	lung:	fetal
22	chr8:91661614-91661664	HEEpiC	esophagus:	n/a
23	chr8:91661614-91661664	NHBE	bronchial:	n/a
24	chr8:91661614-91661664	HUVEC	blood vessel:	n/a
25	chr8:91661614-91661664	AoSMC	blood vessel:	n/a
26	chr8:91661614-91661664	HRCEpiC	kidney:	n/a
27	chr8:91661614-91661664	GM06990	blood:	n/a
28	chr8:91661614-91661664	HEK293	kidney:	embryo
29	chr8:91661614-91661664	Jurkat	blood:	n/a
30	chr8:91661614-91661664	HL-60	blood:	n/a
31	chr8:91661614-91661664	GM12891	blood:	n/a
32	chr8:91661614-91661664	AG09319	gingival:	n/a
33	chr8:91661614-91661664	NHDF-neo	bronchial:	n/a
34	chr8:91661614-91661664	IMR90	lung:	fetal
35	chr8:91661614-91661664	GM12892	blood:	n/a
36	chr8:91661614-91661664	HRE	kidney:	n/a
37	chr8:91661614-91661664	HAEpiC	amniotic membrane:	n/a
38	chr8:91661614-91661664	RPTEC	kidney:	n/a
39	chr8:91661614-91661664	PANC-1	pancreas:	n/a
40	chr8:91661614-91661664	AG10803	skin:	n/a
41	chr8:91661614-91661664	AG04449	skin:	fetal
42	chr8:91661614-91661664	BJ	skin:	n/a
43	chr8:91661614-91661664	SK-N-SH	brain:	n/a
44	chr8:91661614-91661664	ECC-1	luminal epithelium:	n/a
45	chr8:91661614-91661664	HPAEpiC	pulmonary alveolar:	n/a
46	chr8:91661614-91661664	PrEC	prostate:	n/a
47	chr8:91661614-91661664	HCT-116	colon:	n/a
48	chr8:91661614-91661664	CMK	blood:	n/a
49	chr8:91661614-91661664	AG09309	skin:	n/a
50	chr8:91661614-91661664	ProgFib	skin:	n/a

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:91661390..91663583-chr8:91664437..91667314,2	K562	blood:
2	chr8:91661115..91662955-chr8:91684454..91687038,2	K562	blood:
3	chr8:91658730..91663792-chr8:91996044..91998781,4	K562	blood:
4	chr8:91661285..91662958-chr8:91684783..91686987,2	MCF-7	breast:
5	chr8:91656618..91662321-chr8:91871461..91875565,6	MCF-7	breast:
6	chr8:91661320..91663792-chr8:91996044..91997768,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NECAB1-1	chr8:91660706-91663985	ENSG00000246792

No data

Variant related genes	Relation type
TMEM64	TF binding region
TMEM64	CpG island
ENSG00000254251	Chromatin interaction
ENSG00000253250	Chromatin interaction

rs_ID	r²[population]
rs10089172	0.89[AMR][1000 genomes]
rs10101451	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16905097	0.89[AMR][1000 genomes]
rs28480323	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28517725	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs28521858	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs28523907	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28533479	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28535464	0.89[AMR][1000 genomes]
rs4513931	0.89[AMR][1000 genomes]
rs4588812	0.89[AMR][1000 genomes]
rs58636900	0.89[AMR][1000 genomes]
rs73694518	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91659200-91662000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:91659200-91662200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:91659400-91662200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr8:91659400-91662800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr8:91659600-91661800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr8:91659800-91661800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr8:91659800-91663600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr8:91660400-91662800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr8:91660600-91662200	Weak transcription	K562	blood
10	chr8:91660600-91667400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr8:91661000-91663400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr8:91661000-91663800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr8:91661200-91662200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr8:91661200-91662400	Enhancers	NHEK	skin
15	chr8:91661200-91662600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr8:91661400-91662600	Enhancers	HMEC	breast
17	chr8:91661400-91662800	Enhancers	HUVEC	blood vessel
18	chr8:91661400-91663400	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr8:91661400-91663800	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr8:91661600-91661800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr8:91661600-91661800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr8:91661600-91662200	Enhancers	Liver	Liver
23	chr8:91661600-91662400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr8:91661600-91662400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr8:91661600-91662600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr8:91661600-91662800	Enhancers	H9 Cell Line	embryonic stem cell
27	chr8:91661600-91662800	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr8:91661600-91663400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr8:91661600-91663800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links