Variant report

Variant	rs28734843
Chromosome Location	chr16:72908962-72908963
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:72863377..72866034-chr16:72907006..72909220,2	MCF-7	breast:
2	chr16:72907986..72911750-chr16:73080381..73083029,3	MCF-7	breast:
3	chr16:72907863..72909574-chr16:73028864..73030921,2	MCF-7	breast:
4	chr16:72907493..72909909-chr16:72910330..72912576,2	MCF-7	breast:
5	chr16:72906922..72909977-chr16:72911747..72914412,3	MCF-7	breast:
6	chr16:72900009..72904474-chr16:72907917..72911518,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140836	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13330786	0.89[AFR][1000 genomes]
rs13330847	0.89[AFR][1000 genomes]
rs13331811	0.95[AFR][1000 genomes]
rs13332605	0.87[AFR][1000 genomes]
rs13334344	0.84[AFR][1000 genomes]
rs13337721	0.85[AFR][1000 genomes]
rs13338961	0.95[AFR][1000 genomes]
rs9925803	0.95[AFR][1000 genomes]
rs9929959	1.00[AFR][1000 genomes]
rs9930264	1.00[AFR][1000 genomes]
rs9930403	0.90[AFR][1000 genomes]
rs9932992	0.87[AFR][1000 genomes]
rs9933480	0.92[AFR][1000 genomes]
rs9940385	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv572959	chr16:72890216-72923327	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72883200-72909200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr16:72883400-72918800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr16:72883600-72912200	Weak transcription	Ovary	ovary
4	chr16:72884200-72911600	Weak transcription	Gastric	stomach
5	chr16:72885200-72909000	Weak transcription	Lung	lung
6	chr16:72893000-72909600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr16:72893200-72911400	Weak transcription	Stomach Mucosa	stomach
8	chr16:72893400-72909000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr16:72893600-72909000	Weak transcription	Colon Smooth Muscle	Colon
10	chr16:72893600-72909400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr16:72893800-72909200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr16:72894400-72909200	Weak transcription	Fetal Lung	lung
13	chr16:72895200-72918000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr16:72895400-72909200	Weak transcription	Psoas Muscle	Psoas
15	chr16:72895400-72909200	Weak transcription	Right Atrium	heart
16	chr16:72896600-72909200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr16:72897400-72909000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr16:72899600-72909200	Weak transcription	A549	lung
19	chr16:72899800-72909600	Weak transcription	Liver	Liver
20	chr16:72900000-72909000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr16:72900000-72910600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr16:72900400-72912000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr16:72901200-72909000	Weak transcription	Aorta	Aorta
24	chr16:72901200-72909200	Weak transcription	Brain Hippocampus Middle	brain
25	chr16:72901600-72909200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr16:72902800-72911000	Weak transcription	Fetal Stomach	stomach
27	chr16:72902800-72911000	Weak transcription	Right Ventricle	heart
28	chr16:72904200-72909400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr16:72904200-72910800	Weak transcription	Pancreas	Pancrea
30	chr16:72904600-72911200	Weak transcription	Colonic Mucosa	Colon
31	chr16:72906600-72913000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr16:72907000-72909000	Weak transcription	Placenta	Placenta
33	chr16:72907000-72909200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr16:72907000-72910000	Enhancers	Muscle Satellite Cultured Cells	--
35	chr16:72907200-72909000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr16:72907600-72909400	Weak transcription	Fetal Kidney	kidney
37	chr16:72907800-72910200	Enhancers	Fetal Intestine Small	intestine
38	chr16:72907800-72912600	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr16:72907800-72916400	Weak transcription	Fetal Brain Female	brain
40	chr16:72908200-72909000	Enhancers	Fetal Muscle Trunk	muscle
41	chr16:72908200-72909400	Enhancers	Esophagus	oesophagus
42	chr16:72908400-72909400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr16:72908400-72909800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr16:72908400-72910400	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr16:72908400-72910800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr16:72908400-72910800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr16:72908400-72910800	Enhancers	HSMMtube	muscle
48	chr16:72908400-72912400	Enhancers	Small Intestine	intestine
49	chr16:72908400-72912600	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr16:72908400-72913000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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