Variant report

Variant	rs13337721
Chromosome Location	chr16:72866967-72866968
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:72865392..72868405-chr16:73080363..73085094,4	MCF-7	breast:
2	chr16:72865613..72867777-chr16:72870106..72872097,2	K562	blood:
3	chr16:72865024..72867320-chr16:72984929..72987398,2	MCF-7	breast:
4	chr16:72866564..72867123-chr16:73233074..73233789,3	MCF-7	breast:
5	chr16:72865444..72867125-chr16:73097425..73099018,2	MCF-7	breast:
6	chr16:72535869..72536485-chr16:72866539..72867122,2	MCF-7	breast:
7	chr16:72866194..72867131-chr16:73230350..73231282,2	MCF-7	breast:
8	chr16:72865527..72874482-chr16:73088867..73095662,17	MCF-7	breast:
9	chr16:72865187..72868236-chr16:72868414..72870340,6	MCF-7	breast:
10	chr16:72866296..72867040-chr16:72880751..72881406,3	MCF-7	breast:
11	chr16:72866178..72867361-chr16:72995133..72996363,5	MCF-7	breast:
12	chr16:72866181..72867126-chr16:73364094..73364625,2	MCF-7	breast:
13	chr16:72866323..72867063-chr16:73302656..73303175,2	MCF-7	breast:
14	chr16:72866473..72867074-chr16:72880127..72880808,2	MCF-7	breast:
15	chr16:72866647..72870227-chr16:73029377..73032600,4	MCF-7	breast:
16	chr16:72866356..72867110-chr16:72879403..72880151,2	MCF-7	breast:
17	chr16:72866237..72867010-chr16:72890333..72890886,2	MCF-7	breast:
18	chr16:72865539..72868263-chr16:72993679..72995646,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000140836	Chromatin interaction
ENSG00000271009	Chromatin interaction
ENSG00000272250	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12102708	1.00[AMR][1000 genomes]
rs13330786	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13330847	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13331811	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13332605	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13332877	0.81[YRI][hapmap]
rs13334344	1.00[AMR][1000 genomes]
rs13336635	1.00[AMR][1000 genomes]
rs13336787	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13337986	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13338961	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13339024	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28405979	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28495101	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28571692	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28635002	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28734843	0.85[AFR][1000 genomes]
rs28739563	1.00[AMR][1000 genomes]
rs61737017	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8044830	0.92[YRI][hapmap]
rs9925803	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9927597	1.00[AMR][1000 genomes]
rs9929959	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9930264	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9930403	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9932992	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9933480	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9940385	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063049	chr16:72577004-72887111	Weak transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv542952	chr16:72577004-72887111	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72822200-72869800	Weak transcription	Primary B cells from peripheral blood	blood
2	chr16:72832600-72874800	Weak transcription	Spleen	Spleen
3	chr16:72834200-72874200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr16:72834800-72872200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr16:72835200-72867400	Weak transcription	NHEK	skin
6	chr16:72845600-72869400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr16:72845600-72874400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr16:72845800-72867000	Weak transcription	Ovary	ovary
9	chr16:72848400-72874200	Weak transcription	Right Ventricle	heart
10	chr16:72854200-72867400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr16:72854400-72867000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr16:72855800-72874400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr16:72859200-72874200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr16:72859200-72874600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr16:72859200-72874800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr16:72859600-72874200	Weak transcription	Lung	lung
17	chr16:72860200-72869800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr16:72861200-72874600	Weak transcription	Adipose Nuclei	Adipose
19	chr16:72861800-72867000	Weak transcription	Aorta	Aorta
20	chr16:72861800-72874800	Weak transcription	Right Atrium	heart
21	chr16:72862000-72867400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr16:72862000-72867400	Weak transcription	HMEC	breast
23	chr16:72862600-72867400	Weak transcription	NHLF	lung
24	chr16:72862600-72874800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr16:72862600-72882600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr16:72862800-72872000	Weak transcription	Fetal Lung	lung
27	chr16:72863800-72867000	Weak transcription	Fetal Muscle Trunk	muscle
28	chr16:72863800-72874200	Weak transcription	Left Ventricle	heart
29	chr16:72863800-72874400	Weak transcription	Duodenum Mucosa	Duodenum
30	chr16:72863800-72878600	Weak transcription	Fetal Intestine Large	intestine
31	chr16:72864000-72867000	Weak transcription	Fetal Muscle Leg	muscle
32	chr16:72864000-72874200	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr16:72864000-72874200	Weak transcription	Osteobl	bone
34	chr16:72864000-72874400	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr16:72864200-72868600	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr16:72864200-72874800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr16:72864400-72869400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr16:72864400-72870800	Weak transcription	Fetal Intestine Small	intestine
39	chr16:72864400-72875200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr16:72864600-72867000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr16:72864600-72867000	Weak transcription	HSMM	muscle
42	chr16:72865000-72874800	Weak transcription	Psoas Muscle	Psoas
43	chr16:72865200-72868200	Weak transcription	GM12878-XiMat	blood
44	chr16:72866000-72867200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr16:72866000-72867200	Enhancers	Fetal Brain Male	brain
46	chr16:72866000-72867600	Enhancers	Brain Germinal Matrix	brain
47	chr16:72866000-72867800	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr16:72866000-72868000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr16:72866000-72868000	Enhancers	Colon Smooth Muscle	Colon
50	chr16:72866200-72867000	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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